No. words: 752; after pruning: 726


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:317)  281  2.20 0.00 0.00  BE423249At01P103C02P103E081F1_049.ab1        1   318 (55)  C BE423249At01P103C02P103E081R1_049.ab1   (61)   318     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C BE423249At01P103C02P103E081R1_049.ab1   379 
   69    BE423249At01P103C02P103E081F1_049.ab1     8 
   80  C BE423249At01P103C02P103E081R1_049.ab1   300 
  112    BE423249At01P103C02P103E081F1_049.ab1    51 
  116  C BE423249At01P103C02P103E081R1_049.ab1   264 
  120    BE423249At01P103C02P103E081F1_049.ab1    59 
  167  C BE423249At01P103C02P103E081R1_049.ab1   213 
  179    BE423249At01P103C02P103E081F1_049.ab1   118 
  193  C BE423249At01P103C02P103E081R1_049.ab1   187 
  197    BE423249At01P103C02P103E081F1_049.ab1   136 
  201  C BE423249At01P103C02P103E081R1_049.ab1   179 
  209    BE423249At01P103C02P103E081F1_049.ab1   148 
  233  C BE423249At01P103C02P103E081R1_049.ab1   147 
  249    BE423249At01P103C02P103E081F1_049.ab1   188 
  257  C BE423249At01P103C02P103E081R1_049.ab1   123 
  265    BE423249At01P103C02P103E081F1_049.ab1   204 
  280  C BE423249At01P103C02P103E081R1_049.ab1   100 
  292    BE423249At01P103C02P103E081F1_049.ab1   231 
  300  C BE423249At01P103C02P103E081R1_049.ab1    80 
  309    BE423249At01P103C02P103E081F1_049.ab1   248 
  313  C BE423249At01P103C02P103E081R1_049.ab1    67 
  317    BE423249At01P103C02P103E081F1_049.ab1   256 
  321  C BE423249At01P103C02P103E081R1_049.ab1    59 
  333    BE423249At01P103C02P103E081F1_049.ab1   272 
  345  C BE423249At01P103C02P103E081R1_049.ab1    35 
  353    BE423249At01P103C02P103E081F1_049.ab1   292 
  357  C BE423249At01P103C02P103E081R1_049.ab1    23 
  369    BE423249At01P103C02P103E081F1_049.ab1   308 
Contig length: old 434, new 434

Contig length: old 434, new 434
New start: 0 
S Change at: 305; seg lengths: entry 1, contig 1