No. words: 977; after pruning: 937


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:324)  302  0.31 0.00 0.31  BE423249Ld01P103C02P103E081F1_078.ab1        1   325 (169)  C BE423249Ld01P103C02P103E081R1_078.ab1   (159)   324     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C BE423249Ld01P103C02P103E081R1_078.ab1   483 
  219    BE423249Ld01P103C02P103E081F1_078.ab1    60 
  223  C BE423249Ld01P103C02P103E081R1_078.ab1   261 
  247    BE423249Ld01P103C02P103E081F1_078.ab1    88 
  259  C BE423249Ld01P103C02P103E081R1_078.ab1   225 
  375    BE423249Ld01P103C02P103E081F1_078.ab1   216 
  435  C BE423249Ld01P103C02P103E081R1_078.ab1    49 
  459    BE423249Ld01P103C02P103E081F1_078.ab1   300 
  463  C BE423249Ld01P103C02P103E081R1_078.ab1    21 
  471    BE423249Ld01P103C02P103E081F1_078.ab1   312 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0