No. words: 993; after pruning: 953


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:344)  312  0.29 0.29 0.29  BE423249Ld03P103C02P103E081F1_074.ab1        1   345 (141)  C BE423249Ld03P103C02P103E081R1_074.ab1   (162)   345     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1  C BE423249Ld03P103C02P103E081R1_074.ab1   507 
  364    BE423249Ld03P103C02P103E081F1_074.ab1   201 
  460  C BE423249Ld03P103C02P103E081R1_074.ab1    48 
  476    BE423249Ld03P103C02P103E081F1_074.ab1   313 
  480  C BE423249Ld03P103C02P103E081R1_074.ab1    28 
  495    BE423249Ld03P103C02P103E081F1_074.ab1   332 
Contig length: old 648, new 649

Contig length: old 649, new 649
New start: 0