No. words: 1040; after pruning: 1014


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:811)  199  3.07 0.00 0.00  BE424200Ld05P067E01P067E071F1_028.ab1      416   643 (0)  C BE424200Ld05P067E01P067E071R1_028.ab1   (0)   397   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1    BE424200Ld05P067E01P067E071F1_028.ab1     1 
  423  C BE424200Ld05P067E01P067E071R1_028.ab1   390 
  427    BE424200Ld05P067E01P067E071F1_028.ab1   427 
  461  C BE424200Ld05P067E01P067E071R1_028.ab1   352 
  465    BE424200Ld05P067E01P067E071F1_028.ab1   465 
  498  C BE424200Ld05P067E01P067E071R1_028.ab1   315 
  510    BE424200Ld05P067E01P067E071F1_028.ab1   510 
  518  C BE424200Ld05P067E01P067E071R1_028.ab1   295 
  526    BE424200Ld05P067E01P067E071F1_028.ab1   526 
  542  C BE424200Ld05P067E01P067E071R1_028.ab1   271 
  606    BE424200Ld05P067E01P067E071F1_028.ab1   606 
  629  C BE424200Ld05P067E01P067E071R1_028.ab1   184 
Contig length: old 812, new 812

Contig length: old 812, new 812
New start: 0