No. words: 1244; after pruning: 1218


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.2 (1,1:447)  374  4.24 0.22 0.22  BE424246Ld01P129C02P129C081F1_092.ab1        1   448 (169)  C BE424246Ld01P129C02P129C081R1_092.ab1   (179)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BE424246Ld01P129C02P129C081R1_092.ab1   627 
  184    BE424246Ld01P129C02P129C081F1_092.ab1     5 
  188  C BE424246Ld01P129C02P129C081R1_092.ab1   440 
  205    BE424246Ld01P129C02P129C081F1_092.ab1    25 
  209  C BE424246Ld01P129C02P129C081R1_092.ab1   419 
  299    BE424246Ld01P129C02P129C081F1_092.ab1   120 
  307  C BE424246Ld01P129C02P129C081R1_092.ab1   321 
  341    BE424246Ld01P129C02P129C081F1_092.ab1   162 
  345  C BE424246Ld01P129C02P129C081R1_092.ab1   283 
  357    BE424246Ld01P129C02P129C081F1_092.ab1   178 
  376  C BE424246Ld01P129C02P129C081R1_092.ab1   252 
  390    BE424246Ld01P129C02P129C081F1_092.ab1   211 
  402  C BE424246Ld01P129C02P129C081R1_092.ab1   226 
  430    BE424246Ld01P129C02P129C081F1_092.ab1   251 
  438  C BE424246Ld01P129C02P129C081R1_092.ab1   190 
  464    BE424246Ld01P129C02P129C081F1_092.ab1   285 
  468  C BE424246Ld01P129C02P129C081R1_092.ab1   160 
  476    BE424246Ld01P129C02P129C081F1_092.ab1   297 
  480  C BE424246Ld01P129C02P129C081R1_092.ab1   148 
  494    BE424246Ld01P129C02P129C081F1_092.ab1   315 
  527  C BE424246Ld01P129C02P129C081R1_092.ab1   101 
  531    BE424246Ld01P129C02P129C081F1_092.ab1   352 
  535  C BE424246Ld01P129C02P129C081R1_092.ab1    93 
  551    BE424246Ld01P129C02P129C081F1_092.ab1   372 
  571  C BE424246Ld01P129C02P129C081R1_092.ab1    57 
  579    BE424246Ld01P129C02P129C081F1_092.ab1   400 
  603  C BE424246Ld01P129C02P129C081R1_092.ab1    25 
  607    BE424246Ld01P129C02P129C081F1_092.ab1   428 
  619  C BE424246Ld01P129C02P129C081R1_092.ab1     9 
  623    BE424246Ld01P129C02P129C081F1_092.ab1   444 
Contig length: old 796, new 796

Contig length: old 796, new 796
New start: 0 
S Change at: 201; seg lengths: entry 1, contig 1
S Change at: 362; seg lengths: entry 7, contig 7
S Change at: 409; seg lengths: entry 1, contig 1
S Change at: 486; seg lengths: entry 1, contig 1
S Change at: 506; seg lengths: entry 1, contig 1
S Change at: 563; seg lengths: entry 1, contig 1