No. words: 1128; after pruning: 1088


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -0.8 -0.8 (1,1:934)  174  2.15 0.00 0.00  BE425919At02P067H01P067H071F1_038.ab1      355   540 (3)  C BE425919At02P067H01P067H071R1_038.ab1   (4)   581   396 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.8       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    BE425919At02P067H01P067H071F1_038.ab1     1 
  497  C BE425919At02P067H01P067H071R1_038.ab1   439 
  501    BE425919At02P067H01P067H071F1_038.ab1   501 
  509  C BE425919At02P067H01P067H071R1_038.ab1   427 
Contig length: old 935, new 935

Contig length: old 935, new 935
New start: 0 
S Change at: 520; seg lengths: entry 1, contig 1
S Change at: 685; seg lengths: entry 1, contig 1