No. words: 1788; after pruning: 1762


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:879)  865  0.23 0.00 0.00  BE425919Ld09P067H01P067H071F1_071.ab1        1   880 (12)  C BE425919Ld09P067H01P067H071R1_071.ab1   (16)   880     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  434 nodes

 219 str. conn. components

Path
    1  C BE425919Ld09P067H01P067H071R1_071.ab1   896 
   20    BE425919Ld09P067H01P067H071F1_071.ab1     4 
   56  C BE425919Ld09P067H01P067H071R1_071.ab1   841 
   60    BE425919Ld09P067H01P067H071F1_071.ab1    44 
  594  C BE425919Ld09P067H01P067H071R1_071.ab1   303 
  890    BE425919Ld09P067H01P067H071F1_071.ab1   874 
Contig length: old 908, new 908

Contig length: old 908, new 908
New start: 0