No. words: 1754; after pruning: 1728


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:879)  832  0.81 0.00 0.12  BE425919Ld12P067H01P067H071F1_065.ab1        1   867 (0)  C BE425919Ld12P067H01P067H071R1_065.ab1   (8)   879    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1  C BE425919Ld12P067H01P067H071R1_065.ab1   887 
   18    BE425919Ld12P067H01P067H071F1_065.ab1    10 
  614  C BE425919Ld12P067H01P067H071R1_065.ab1   274 
  618    BE425919Ld12P067H01P067H071F1_065.ab1   610 
  638  C BE425919Ld12P067H01P067H071R1_065.ab1   250 
  646    BE425919Ld12P067H01P067H071F1_065.ab1   638 
  658  C BE425919Ld12P067H01P067H071R1_065.ab1   230 
  682    BE425919Ld12P067H01P067H071F1_065.ab1   674 
  686  C BE425919Ld12P067H01P067H071R1_065.ab1   202 
  690    BE425919Ld12P067H01P067H071F1_065.ab1   682 
  694  C BE425919Ld12P067H01P067H071R1_065.ab1   194 
Contig length: old 887, new 887

Contig length: old 887, new 887
New start: 0 
S Change at: 14; seg lengths: entry 1, contig 1
S Change at: 49; seg lengths: entry 1, contig 1