No. words: 949; after pruning: 923


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -4.4 -4.4 (1,1:873)   41 11.27 1.41 0.00  BE425919Tu01P067H01P067H071F1_048.ab1      469   539 (0)  C BE425919Tu01P067H01P067H071R1_048.ab1   (3)   407   336 *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.4 (<20 part: -5.4 (#=9), >20:0.0 (#=0); in HQ: -5.4, out HQ 0.0), match: 1.4  lead: -0.5  total: -4.5   41 11.27 1.41 0.00  BE425919Tu01P067H01P067H071F1_048.ab1      469   539 (0)  C BE425919Tu01P067H01P067H071R1_048.ab1   (3)   407   336 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.4       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  16 nodes

 10 str. conn. components

Path
    1    BE425919Tu01P067H01P067H071F1_048.ab1     1 
  502  C BE425919Tu01P067H01P067H071R1_048.ab1   374 
Contig length: old 874, new 875

Contig length: old 875, new 875
New start: 0