No. words: 2023; after pruning: 1984


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 7.9 (1,1:556)  537  0.18 0.00 0.00  BE426222Ld06P067A02P067A081F1_015.ab1        8   557 (170)  C BE426222Ld06P067A02P067A081R1_015.ab1   (151)   550     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 2:  272 nodes

 138 str. conn. components

Path
    1  C BE426222Ld06P067A02P067A081R1_015.ab1   701 
  171    BE426222Ld06P067A02P067A081F1_015.ab1    27 
  191  C BE426222Ld06P067A02P067A081R1_015.ab1   511 
  219    BE426222Ld06P067A02P067A081F1_015.ab1    75 
  223  C BE426222Ld06P067A02P067A081R1_015.ab1   479 
  231    BE426222Ld06P067A02P067A081F1_015.ab1    87 
  243  C BE426222Ld06P067A02P067A081R1_015.ab1   459 
  255    BE426222Ld06P067A02P067A081F1_015.ab1   111 
  283  C BE426222Ld06P067A02P067A081R1_015.ab1   419 
  287    BE426222Ld06P067A02P067A081F1_015.ab1   143 
  295  C BE426222Ld06P067A02P067A081R1_015.ab1   407 
  311    BE426222Ld06P067A02P067A081F1_015.ab1   167 
  319  C BE426222Ld06P067A02P067A081R1_015.ab1   383 
  323    BE426222Ld06P067A02P067A081F1_015.ab1   179 
  327  C BE426222Ld06P067A02P067A081R1_015.ab1   375 
  331    BE426222Ld06P067A02P067A081F1_015.ab1   187 
  391  C BE426222Ld06P067A02P067A081R1_015.ab1   311 
  395    BE426222Ld06P067A02P067A081F1_015.ab1   251 
  463  C BE426222Ld06P067A02P067A081R1_015.ab1   239 
  467    BE426222Ld06P067A02P067A081F1_015.ab1   323 
  495  C BE426222Ld06P067A02P067A081R1_015.ab1   207 
  499    BE426222Ld06P067A02P067A081F1_015.ab1   355 
  667  C BE426222Ld06P067A02P067A081R1_015.ab1    35 
  675    BE426222Ld06P067A02P067A081F1_015.ab1   531 
  679  C BE426222Ld06P067A02P067A081R1_015.ab1    23 
  691    BE426222Ld06P067A02P067A081F1_015.ab1   547 
Contig length: old 871, new 871

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE426222Ld06P067A02P067A081R1_058.ab1     1 
Contig length: old 595, new 595

Contig length: old 871, new 871
New start: 0