No. words: 2836; after pruning: 2784


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:547)  534  0.00 0.00 0.18  BE426222Ld09P067A02P067A081F1_052.ab1        1   548 (164)  C BE426222Ld09P067A02P067A081R1_052.ab1   (154)   547     1 *
Merge:(0)    3    0.0 5.1 (1,1:553)  495  2.18 0.18 0.18  BE426222Ld09P067A02P067A081F1_009.ab1        4   554 (173)  C BE426222Ld09P067A02P067A081R1_009.ab1   (145)   551     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
Fail: (1)  169  -24.7 -5.9 (2,2:11)  658  0.57 0.00 0.72  BE426222Ld09P067A02P067A081R1_009.ab1        1   696 (0)    BE426222Ld09P067A02P067A081R1_052.ab1       11   701 (0) *
  Worst pair: offset 0 
LLR breakdown: discreps: -36.6 (<20 part: -0.6 (#=1), >20:-36.0 (#=9); in HQ: -36.6, out HQ 0.0), match: 11.9  total: -24.7  497  0.74 0.18 0.92  BE426222Ld09P067A02P067A081R1_009.ab1        1   542 (154)  C BE426222Ld09P067A02P067A081F1_052.ab1   (174)   538     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-24.7       0        1

Gap   # merges  # failures
 size
169       0        1

Offset
  0       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  272 nodes

 138 str. conn. components

Path
    1  C BE426222Ld09P067A02P067A081R1_052.ab1   701 
  182    BE426222Ld09P067A02P067A081F1_052.ab1    28 
  186  C BE426222Ld09P067A02P067A081R1_052.ab1   516 
  194    BE426222Ld09P067A02P067A081F1_052.ab1    40 
  198  C BE426222Ld09P067A02P067A081R1_052.ab1   504 
  214    BE426222Ld09P067A02P067A081F1_052.ab1    60 
  218  C BE426222Ld09P067A02P067A081R1_052.ab1   484 
  222    BE426222Ld09P067A02P067A081F1_052.ab1    68 
  250  C BE426222Ld09P067A02P067A081R1_052.ab1   452 
  254    BE426222Ld09P067A02P067A081F1_052.ab1   100 
  286  C BE426222Ld09P067A02P067A081R1_052.ab1   416 
  290    BE426222Ld09P067A02P067A081F1_052.ab1   136 
Contig length: old 865, new 866

Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BE426222Ld09P067A02P067A081R1_009.ab1   696 
  181    BE426222Ld09P067A02P067A081F1_009.ab1    38 
  185  C BE426222Ld09P067A02P067A081R1_009.ab1   512 
  217    BE426222Ld09P067A02P067A081F1_009.ab1    74 
  225  C BE426222Ld09P067A02P067A081R1_009.ab1   472 
  253    BE426222Ld09P067A02P067A081F1_009.ab1   110 
  281  C BE426222Ld09P067A02P067A081R1_009.ab1   416 
  680    BE426222Ld09P067A02P067A081F1_009.ab1   537 
Contig length: old 869, new 870

Contig length: old 866, new 866
New start: 0 

Contig length: old 870, new 870
New start: 0