No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:458)  442  0.44 0.44 0.00  BE426298Ld03P103B03P103B091F1_096.ab1        1   458 (157)  C BE426298Ld03P103B03P103B091R1_096.ab1   (178)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C BE426298Ld03P103B03P103B091R1_096.ab1   638 
  302    BE426298Ld03P103B03P103B091F1_096.ab1   122 
  314  C BE426298Ld03P103B03P103B091R1_096.ab1   325 
  346    BE426298Ld03P103B03P103B091F1_096.ab1   166 
  374  C BE426298Ld03P103B03P103B091R1_096.ab1   265 
  394    BE426298Ld03P103B03P103B091F1_096.ab1   214 
  502  C BE426298Ld03P103B03P103B091R1_096.ab1   137 
  506    BE426298Ld03P103B03P103B091F1_096.ab1   326 
  538  C BE426298Ld03P103B03P103B091R1_096.ab1   101 
  542    BE426298Ld03P103B03P103B091F1_096.ab1   362 
  574  C BE426298Ld03P103B03P103B091R1_096.ab1    65 
  582    BE426298Ld03P103B03P103B091F1_096.ab1   402 
Contig length: old 794, new 795

Contig length: old 795, new 795
New start: 0