No. words: 1244; after pruning: 1218


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:457)  447  0.00 0.44 0.00  BE426298Ld04P103B03P103B091F1_094.ab1        1   457 (156)  C BE426298Ld04P103B03P103B091R1_094.ab1   (172)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C BE426298Ld04P103B03P103B091R1_094.ab1   631 
  299    BE426298Ld04P103B03P103B091F1_094.ab1   125 
  307  C BE426298Ld04P103B03P103B091R1_094.ab1   325 
  371    BE426298Ld04P103B03P103B091F1_094.ab1   197 
  475  C BE426298Ld04P103B03P103B091R1_094.ab1   157 
  487    BE426298Ld04P103B03P103B091F1_094.ab1   313 
  495  C BE426298Ld04P103B03P103B091R1_094.ab1   137 
  499    BE426298Ld04P103B03P103B091F1_094.ab1   325 
  539  C BE426298Ld04P103B03P103B091R1_094.ab1    93 
  543    BE426298Ld04P103B03P103B091F1_094.ab1   369 
  555  C BE426298Ld04P103B03P103B091R1_094.ab1    77 
  575    BE426298Ld04P103B03P103B091F1_094.ab1   401 
Contig length: old 786, new 787

Contig length: old 787, new 787
New start: 0