No. words: 1234; after pruning: 1208


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.2 (1,1:452)  437  0.45 0.22 0.00  BE426298Ld05P103B03P103B091F1_092.ab1        5   453 (183)  C BE426298Ld05P103B03P103B091R1_092.ab1   (148)   450     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C BE426298Ld05P103B03P103B091R1_092.ab1   598 
  266    BE426298Ld05P103B03P103B091F1_092.ab1   121 
  274  C BE426298Ld05P103B03P103B091R1_092.ab1   325 
  338    BE426298Ld05P103B03P103B091F1_092.ab1   193 
  506  C BE426298Ld05P103B03P103B091R1_092.ab1    93 
  514    BE426298Ld05P103B03P103B091F1_092.ab1   369 
  530  C BE426298Ld05P103B03P103B091R1_092.ab1    69 
  538    BE426298Ld05P103B03P103B091F1_092.ab1   393 
Contig length: old 781, new 781

Contig length: old 781, new 781
New start: 0