No. words: 1168; after pruning: 1142


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.9 (1,1:389)  356  1.80 0.26 0.00  BE426356Ld07P067D02P067D081F1_016.ab1        3   390 (204)  C BE426356Ld07P067D02P067D081R1_016.ab1   (185)   389     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C BE426356Ld07P067D02P067D081R1_016.ab1   574 
  196    BE426356Ld07P067D02P067D081F1_016.ab1    12 
  216  C BE426356Ld07P067D02P067D081R1_016.ab1   359 
  226    BE426356Ld07P067D02P067D081F1_016.ab1    42 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0