No. words: 972; after pruning: 946


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    8   -4.0 -4.0 (1,1:251)  130 14.40 0.41 0.00  BE426356Ld08P067D02P067D081F1_014.ab1        9   251 (342)  C BE426356Ld08P067D02P067D081R1_014.ab1   (135)   244     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.2 (<20 part: -8.2 (#=36), >20:0.0 (#=0); in HQ: -8.2, out HQ 0.0), match: 4.6  lead: -0.5  total: -4.1  130 14.40 0.41 0.00  BE426356Ld08P067D02P067D081F1_014.ab1        9   251 (342)  C BE426356Ld08P067D02P067D081R1_014.ab1   (135)   244     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  40 nodes

 22 str. conn. components

Path
    1  C BE426356Ld08P067D02P067D081R1_014.ab1   379 
  139    BE426356Ld08P067D02P067D081F1_014.ab1    12 
Contig length: old 720, new 720

Contig length: old 720, new 720
New start: 0