No. words: 1579; after pruning: 1553


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:1147)  412  0.00 0.00 0.23  BE426393Ld01P016D02P016D081F1_039.ab1      355   786 (0)  C BE426393Ld01P016D02P016D081R1_039.ab1   (0)   793   363 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    BE426393Ld01P016D02P016D081F1_039.ab1     1 
  546  C BE426393Ld01P016D02P016D081R1_039.ab1   603 
  550    BE426393Ld01P016D02P016D081F1_039.ab1   550 
  570  C BE426393Ld01P016D02P016D081R1_039.ab1   579 
  574    BE426393Ld01P016D02P016D081F1_039.ab1   574 
  578  C BE426393Ld01P016D02P016D081R1_039.ab1   571 
  582    BE426393Ld01P016D02P016D081F1_039.ab1   582 
  586  C BE426393Ld01P016D02P016D081R1_039.ab1   563 
  594    BE426393Ld01P016D02P016D081F1_039.ab1   594 
  598  C BE426393Ld01P016D02P016D081R1_039.ab1   551 
Contig length: old 1148, new 1148

Contig length: old 1148, new 1148
New start: 0