No. words: 1554; after pruning: 1528


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:1147)  392  0.00 0.00 0.00  BE426393Ld02P016D02P016D081F1_037.ab1      374   779 (0)  C BE426393Ld02P016D02P016D081R1_037.ab1   (0)   775   370 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1    BE426393Ld02P016D02P016D081F1_037.ab1     1 
  557  C BE426393Ld02P016D02P016D081R1_037.ab1   592 
  561    BE426393Ld02P016D02P016D081F1_037.ab1   561 
  581  C BE426393Ld02P016D02P016D081R1_037.ab1   568 
  593    BE426393Ld02P016D02P016D081F1_037.ab1   593 
  597  C BE426393Ld02P016D02P016D081R1_037.ab1   552 
Contig length: old 1148, new 1148

Contig length: old 1148, new 1148
New start: 0