No. words: 1481; after pruning: 1455


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.4 (1,1:1171)  292  0.00 0.33 0.00  BE426393Ld11P016D02P016D081F1_036.ab1      484   788 (0)  C BE426393Ld11P016D02P016D081R1_036.ab1   (3)   690   385 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1    BE426393Ld11P016D02P016D081F1_036.ab1     1 
  644  C BE426393Ld11P016D02P016D081R1_036.ab1   530 
  652    BE426393Ld11P016D02P016D081F1_036.ab1   652 
  656  C BE426393Ld11P016D02P016D081R1_036.ab1   518 
  664    BE426393Ld11P016D02P016D081F1_036.ab1   664 
  668  C BE426393Ld11P016D02P016D081R1_036.ab1   506 
  688    BE426393Ld11P016D02P016D081F1_036.ab1   688 
  692  C BE426393Ld11P016D02P016D081R1_036.ab1   482 
  720    BE426393Ld11P016D02P016D081F1_036.ab1   720 
  724  C BE426393Ld11P016D02P016D081R1_036.ab1   450 
Contig length: old 1172, new 1173

Contig length: old 1173, new 1173
New start: 0