No. words: 1152; after pruning: 1126


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.8 (1,1:415)  408  0.00 0.00 0.00  BE426418Ld02P129D02P129D081F1_091.ab1        1   413 (179)  C BE426418Ld02P129D02P129D081R1_091.ab1   (144)   416     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE426418Ld02P129D02P129D081R1_091.ab1   560 
  176    BE426418Ld02P129D02P129D081F1_091.ab1    32 
  180  C BE426418Ld02P129D02P129D081R1_091.ab1   381 
  208    BE426418Ld02P129D02P129D081F1_091.ab1    64 
  212  C BE426418Ld02P129D02P129D081R1_091.ab1   349 
  216    BE426418Ld02P129D02P129D081F1_091.ab1    72 
  228  C BE426418Ld02P129D02P129D081R1_091.ab1   333 
  236    BE426418Ld02P129D02P129D081F1_091.ab1    92 
  240  C BE426418Ld02P129D02P129D081R1_091.ab1   321 
  244    BE426418Ld02P129D02P129D081F1_091.ab1   100 
  248  C BE426418Ld02P129D02P129D081R1_091.ab1   313 
  280    BE426418Ld02P129D02P129D081F1_091.ab1   136 
  288  C BE426418Ld02P129D02P129D081R1_091.ab1   273 
  304    BE426418Ld02P129D02P129D081F1_091.ab1   160 
  328  C BE426418Ld02P129D02P129D081R1_091.ab1   233 
  336    BE426418Ld02P129D02P129D081F1_091.ab1   192 
  364  C BE426418Ld02P129D02P129D081R1_091.ab1   197 
  376    BE426418Ld02P129D02P129D081F1_091.ab1   232 
  380  C BE426418Ld02P129D02P129D081R1_091.ab1   181 
  388    BE426418Ld02P129D02P129D081F1_091.ab1   244 
  436  C BE426418Ld02P129D02P129D081R1_091.ab1   125 
  440    BE426418Ld02P129D02P129D081F1_091.ab1   296 
  448  C BE426418Ld02P129D02P129D081R1_091.ab1   113 
  456    BE426418Ld02P129D02P129D081F1_091.ab1   312 
  468  C BE426418Ld02P129D02P129D081R1_091.ab1    93 
  480    BE426418Ld02P129D02P129D081F1_091.ab1   336 
Contig length: old 736, new 736

Contig length: old 736, new 736
New start: 0