No. words: 1154; after pruning: 1128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.6 (1,1:416)  408  0.00 0.00 0.00  BE426418Ld07P129D02P129D081F1_096.ab1        1   413 (180)  C BE426418Ld07P129D02P129D081R1_096.ab1   (144)   417     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE426418Ld07P129D02P129D081R1_096.ab1   561 
  244    BE426418Ld07P129D02P129D081F1_096.ab1   100 
  272  C BE426418Ld07P129D02P129D081R1_096.ab1   290 
  300    BE426418Ld07P129D02P129D081F1_096.ab1   156 
  304  C BE426418Ld07P129D02P129D081R1_096.ab1   258 
  312    BE426418Ld07P129D02P129D081F1_096.ab1   168 
  340  C BE426418Ld07P129D02P129D081R1_096.ab1   222 
  368    BE426418Ld07P129D02P129D081F1_096.ab1   224 
  428  C BE426418Ld07P129D02P129D081R1_096.ab1   134 
  444    BE426418Ld07P129D02P129D081F1_096.ab1   300 
  452  C BE426418Ld07P129D02P129D081R1_096.ab1   110 
  456    BE426418Ld07P129D02P129D081F1_096.ab1   312 
Contig length: old 737, new 737

Contig length: old 737, new 737
New start: 0