No. words: 792; after pruning: 766


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.8 -3.8 (1,1:396)  199 13.10 0.30 0.00  BE426418Sn28P146A04P129E081R1_022.ab1       62   397 (58)  C BE426418Sn28P146A04P129E081F1_022.ab1   (0)   337     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -10.4 (<20 part: -10.4 (#=45), >20:0.0 (#=0); in HQ: -10.4, out HQ 0.0), match: 6.5  total: -3.9  199 13.10 0.30 0.00  BE426418Sn28P146A04P129E081R1_022.ab1       62   397 (58)  C BE426418Sn28P146A04P129E081F1_022.ab1   (0)   337     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  60 nodes

 32 str. conn. components

Path
    1    BE426418Sn28P146A04P129E081R1_022.ab1     1 
   93  C BE426418Sn28P146A04P129E081F1_022.ab1   306 
  276    BE426418Sn28P146A04P129E081R1_022.ab1   276 
  280  C BE426418Sn28P146A04P129E081F1_022.ab1   119 
  333    BE426418Sn28P146A04P129E081R1_022.ab1   333 
  337  C BE426418Sn28P146A04P129E081F1_022.ab1    62 
  385    BE426418Sn28P146A04P129E081R1_022.ab1   384 
Contig length: old 455, new 456

Contig length: old 456, new 455
New start: 0 
S Change at: 77; seg lengths: entry 1, contig 1
S Change at: 84; seg lengths: entry 5, contig 5
S Change at: 243; seg lengths: entry 1, contig 1
D Change at: 361; seg lengths: entry 4, contig 5
S Change at: 390; seg lengths: entry 1, contig 1