No. words: 1185; after pruning: 1159


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:538)  527  0.00 0.00 0.00  BE426418Ta12P146A04P129E081R1_006.ab1        1   539 (57)  C BE426418Ta12P146A04P129E081F1_006.ab1   (50)   539     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C BE426418Ta12P146A04P129E081F1_006.ab1   589 
  118    BE426418Ta12P146A04P129E081R1_006.ab1    68 
  122  C BE426418Ta12P146A04P129E081F1_006.ab1   468 
  142    BE426418Ta12P146A04P129E081R1_006.ab1    92 
  146  C BE426418Ta12P146A04P129E081F1_006.ab1   444 
  162    BE426418Ta12P146A04P129E081R1_006.ab1   112 
  174  C BE426418Ta12P146A04P129E081F1_006.ab1   416 
  186    BE426418Ta12P146A04P129E081R1_006.ab1   136 
  274  C BE426418Ta12P146A04P129E081F1_006.ab1   316 
  314    BE426418Ta12P146A04P129E081R1_006.ab1   264 
Contig length: old 646, new 646

Contig length: old 646, new 646
New start: 0