No. words: 1031; after pruning: 1005


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:383)  368  0.00 0.00 0.26  BE426763Ld02P067C02P067C081F1_039.ab1        1   384 (119)  C BE426763Ld02P067C02P067C081R1_039.ab1   (145)   383     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C BE426763Ld02P067C02P067C081R1_039.ab1   528 
  163    BE426763Ld02P067C02P067C081F1_039.ab1    18 
  171  C BE426763Ld02P067C02P067C081R1_039.ab1   358 
  179    BE426763Ld02P067C02P067C081F1_039.ab1    34 
  199  C BE426763Ld02P067C02P067C081R1_039.ab1   330 
  203    BE426763Ld02P067C02P067C081F1_039.ab1    58 
  219  C BE426763Ld02P067C02P067C081R1_039.ab1   310 
  223    BE426763Ld02P067C02P067C081F1_039.ab1    78 
  227  C BE426763Ld02P067C02P067C081R1_039.ab1   302 
  255    BE426763Ld02P067C02P067C081F1_039.ab1   110 
  263  C BE426763Ld02P067C02P067C081R1_039.ab1   266 
  267    BE426763Ld02P067C02P067C081F1_039.ab1   122 
  319  C BE426763Ld02P067C02P067C081R1_039.ab1   210 
  323    BE426763Ld02P067C02P067C081F1_039.ab1   178 
  391  C BE426763Ld02P067C02P067C081R1_039.ab1   138 
  399    BE426763Ld02P067C02P067C081F1_039.ab1   254 
  459  C BE426763Ld02P067C02P067C081R1_039.ab1    70 
  467    BE426763Ld02P067C02P067C081F1_039.ab1   322 
  471  C BE426763Ld02P067C02P067C081R1_039.ab1    58 
  479    BE426763Ld02P067C02P067C081F1_039.ab1   334 
  487  C BE426763Ld02P067C02P067C081R1_039.ab1    42 
  503    BE426763Ld02P067C02P067C081F1_039.ab1   358 
  511  C BE426763Ld02P067C02P067C081R1_039.ab1    18 
  515    BE426763Ld02P067C02P067C081F1_039.ab1   370 
Contig length: old 647, new 648

Contig length: old 648, new 648
New start: 0