No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:359)  343  0.00 0.00 0.28  BE426763Ld06P067C02P067C081F1_048.ab1        1   360 (145)  C BE426763Ld06P067C02P067C081R1_048.ab1   (137)   359     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C BE426763Ld06P067C02P067C081R1_048.ab1   496 
  193    BE426763Ld06P067C02P067C081F1_048.ab1    56 
  197  C BE426763Ld06P067C02P067C081R1_048.ab1   300 
  213    BE426763Ld06P067C02P067C081F1_048.ab1    76 
  217  C BE426763Ld06P067C02P067C081R1_048.ab1   280 
  229    BE426763Ld06P067C02P067C081F1_048.ab1    92 
  245  C BE426763Ld06P067C02P067C081R1_048.ab1   252 
  253    BE426763Ld06P067C02P067C081F1_048.ab1   116 
  261  C BE426763Ld06P067C02P067C081R1_048.ab1   236 
  269    BE426763Ld06P067C02P067C081F1_048.ab1   132 
  277  C BE426763Ld06P067C02P067C081R1_048.ab1   220 
  285    BE426763Ld06P067C02P067C081F1_048.ab1   148 
  321  C BE426763Ld06P067C02P067C081R1_048.ab1   176 
  325    BE426763Ld06P067C02P067C081F1_048.ab1   188 
  345  C BE426763Ld06P067C02P067C081R1_048.ab1   152 
  349    BE426763Ld06P067C02P067C081F1_048.ab1   212 
  357  C BE426763Ld06P067C02P067C081R1_048.ab1   140 
  369    BE426763Ld06P067C02P067C081F1_048.ab1   232 
  397  C BE426763Ld06P067C02P067C081R1_048.ab1   100 
  417    BE426763Ld06P067C02P067C081F1_048.ab1   280 
  421  C BE426763Ld06P067C02P067C081R1_048.ab1    76 
  429    BE426763Ld06P067C02P067C081F1_048.ab1   292 
  441  C BE426763Ld06P067C02P067C081R1_048.ab1    56 
  449    BE426763Ld06P067C02P067C081F1_048.ab1   312 
  461  C BE426763Ld06P067C02P067C081R1_048.ab1    36 
  469    BE426763Ld06P067C02P067C081F1_048.ab1   332 
Contig length: old 641, new 642

Contig length: old 642, new 642
New start: 0