No. words: 1040; after pruning: 1014


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:358)  339  0.28 0.00 0.28  BE426763Ld12P067C02P067C081F1_043.ab1        1   359 (180)  C BE426763Ld12P067C02P067C081R1_043.ab1   (143)   358     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C BE426763Ld12P067C02P067C081R1_043.ab1   501 
  261    BE426763Ld12P067C02P067C081F1_043.ab1   118 
  285  C BE426763Ld12P067C02P067C081R1_043.ab1   217 
  357    BE426763Ld12P067C02P067C081F1_043.ab1   214 
  389  C BE426763Ld12P067C02P067C081R1_043.ab1   113 
  397    BE426763Ld12P067C02P067C081F1_043.ab1   254 
Contig length: old 681, new 682

Contig length: old 682, new 682
New start: 0