No. words: 809; after pruning: 783


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -3.7 -3.7 (1,1:379)  280  7.18 0.00 0.27  BE426763Tu02P067C02P067C081F2_092.ab1        5   380 (44)  C BE426763Tu02P067C02P067C081R2_092.ab1   (10)   375     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -9.9 (<20 part: -7.7 (#=27), >20:-2.2 (#=1); in HQ: -9.9, out HQ 0.0), match: 7.8  lead: -1.6  total: -3.7  280  7.18 0.00 0.27  BE426763Tu02P067C02P067C081F2_092.ab1        5   380 (44)  C BE426763Tu02P067C02P067C081R2_092.ab1   (10)   375     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.7       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1  C BE426763Tu02P067C02P067C081R2_092.ab1   385 
   14    BE426763Tu02P067C02P067C081F2_092.ab1     8 
   31  C BE426763Tu02P067C02P067C081R2_092.ab1   355 
  362    BE426763Tu02P067C02P067C081F2_092.ab1   356 
  372  C BE426763Tu02P067C02P067C081R2_092.ab1    14 
  376    BE426763Tu02P067C02P067C081F2_092.ab1   370 
Contig length: old 429, new 430

Contig length: old 430, new 430
New start: 0 
S Change at: 25; seg lengths: entry 3, contig 3
S Change at: 133; seg lengths: entry 1, contig 1
S Change at: 152; seg lengths: entry 1, contig 1