No. words: 892; after pruning: 866


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:276)  271  0.00 0.36 0.00  BE442531Ld01P078B01P078B071F1_016.ab1        1   277 (155)  C BE442531Ld01P078B01P078B071R1_016.ab1   (182)   278     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C BE442531Ld01P078B01P078B071R1_016.ab1   460 
  231    BE442531Ld01P078B01P078B071F1_016.ab1    48 
  235  C BE442531Ld01P078B01P078B071R1_016.ab1   226 
  263    BE442531Ld01P078B01P078B071F1_016.ab1    80 
  267  C BE442531Ld01P078B01P078B071R1_016.ab1   194 
  287    BE442531Ld01P078B01P078B071F1_016.ab1   104 
  291  C BE442531Ld01P078B01P078B071R1_016.ab1   170 
  299    BE442531Ld01P078B01P078B071F1_016.ab1   116 
Contig length: old 615, new 615

Contig length: old 615, new 615
New start: 0