No. words: 861; after pruning: 835


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.1 (1,1:292)  280  0.00 0.34 0.34  BE442531Ld05P078B01P078B071F1_008.ab1        1   292 (126)  C BE442531Ld05P078B01P078B071R1_008.ab1   (150)   293     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C BE442531Ld05P078B01P078B071R1_008.ab1   443 
  235    BE442531Ld05P078B01P078B071F1_008.ab1    84 
  239  C BE442531Ld05P078B01P078B071R1_008.ab1   205 
  287    BE442531Ld05P078B01P078B071F1_008.ab1   136 
  347  C BE442531Ld05P078B01P078B071R1_008.ab1    97 
  359    BE442531Ld05P078B01P078B071F1_008.ab1   208 
Contig length: old 568, new 569

Contig length: old 569, new 569
New start: 0