No. words: 650; after pruning: 624


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.8 -4.8 (1,1:269)  126  0.00 0.00 10.32  BE442531Ld06P078B01P078B071F1_006.ab1       28   279 (139)  C BE442531Ld06P078B01P078B071R1_006.ab1   (0)   232     7 *
  Worst pair: offset 1 
LLR breakdown: discreps: -9.6 (<20 part: -7.3 (#=25), >20:-2.3 (#=1); in HQ: -9.6, out HQ 0.0), match: 5.0  trail: -0.3  total: -4.9  126  0.00 0.00 10.32  BE442531Ld06P078B01P078B071F1_006.ab1       28   279 (139)  C BE442531Ld06P078B01P078B071R1_006.ab1   (0)   232     7 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1    BE442531Ld06P078B01P078B071F1_006.ab1     1 
   41  C BE442531Ld06P078B01P078B071R1_006.ab1   220 
   81    BE442531Ld06P078B01P078B071F1_006.ab1    81 
  113  C BE442531Ld06P078B01P078B071R1_006.ab1   154 
  141    BE442531Ld06P078B01P078B071F1_006.ab1   141 
  179  C BE442531Ld06P078B01P078B071R1_006.ab1    93 
  183    BE442531Ld06P078B01P078B071F1_006.ab1   183 
Contig length: old 418, new 418
Badly positioned read start: BE442531Ld06P078B01P078B071R1_006.ab1, 27 - 53

Contig length: old 418, new 418
New start: 0