No. words: 1207; after pruning: 1125


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:495)  473  0.40 0.00 0.20  BE442617Ld07P067H06P067H121F1_090.ab1        1   496 (132)  C BE442617Ld07P067H06P067H121R1_090.ab1   (84)   495     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE442617Ld07P067H06P067H121R1_090.ab1   579 
   92    BE442617Ld07P067H06P067H121F1_090.ab1     8 
  100  C BE442617Ld07P067H06P067H121R1_090.ab1   480 
  108    BE442617Ld07P067H06P067H121F1_090.ab1    24 
  140  C BE442617Ld07P067H06P067H121R1_090.ab1   440 
  144    BE442617Ld07P067H06P067H121F1_090.ab1    60 
  239  C BE442617Ld07P067H06P067H121R1_090.ab1   341 
  271    BE442617Ld07P067H06P067H121F1_090.ab1   187 
  275  C BE442617Ld07P067H06P067H121R1_090.ab1   305 
  455    BE442617Ld07P067H06P067H121F1_090.ab1   371 
  459  C BE442617Ld07P067H06P067H121R1_090.ab1   121 
  467    BE442617Ld07P067H06P067H121F1_090.ab1   383 
  491  C BE442617Ld07P067H06P067H121R1_090.ab1    89 
  499    BE442617Ld07P067H06P067H121F1_090.ab1   415 
  515  C BE442617Ld07P067H06P067H121R1_090.ab1    65 
  548    BE442617Ld07P067H06P067H121F1_090.ab1   464 
  552  C BE442617Ld07P067H06P067H121R1_090.ab1    28 
  556    BE442617Ld07P067H06P067H121F1_090.ab1   472 
Contig length: old 711, new 712

Contig length: old 712, new 712
New start: 0 
S Change at: 614; seg lengths: entry 1, contig 1
S Change at: 636; seg lengths: entry 1, contig 1