No. words: 1049; after pruning: 1023


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:350)  323  1.42 0.28 0.28  BE442638Ld09P103D03P103F091F1_085.ab1        1   351 (176)  C BE442638Ld09P103D03P103F091R1_085.ab1   (171)   351     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C BE442638Ld09P103D03P103F091R1_085.ab1   522 
  206    BE442638Ld09P103D03P103F091F1_085.ab1    34 
  210  C BE442638Ld09P103D03P103F091R1_085.ab1   313 
  226    BE442638Ld09P103D03P103F091F1_085.ab1    54 
  246  C BE442638Ld09P103D03P103F091R1_085.ab1   277 
  250    BE442638Ld09P103D03P103F091F1_085.ab1    78 
  258  C BE442638Ld09P103D03P103F091R1_085.ab1   265 
  266    BE442638Ld09P103D03P103F091F1_085.ab1    94 
  310  C BE442638Ld09P103D03P103F091R1_085.ab1   213 
  322    BE442638Ld09P103D03P103F091F1_085.ab1   150 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0