No. words: 2180; after pruning: 2128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:383)  371  0.00 0.26 0.00  BE442658Ld08P067G06P067G121F1_064.ab1        1   384 (186)  C BE442658Ld08P067G06P067G121R1_064.ab1   (146)   385     1 *
Merge:(0)    0    0.0 8.2 (1,1:375)  364  0.00 0.27 0.00  BE442658Ld08P067G06P067G121F1_065.ab1        1   376 (174)  C BE442658Ld08P067G06P067G121R1_065.ab1   (152)   377     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  186 nodes

 95 str. conn. components

Path
    1  C BE442658Ld08P067G06P067G121R1_065.ab1   529 
  383    BE442658Ld08P067G06P067G121F1_065.ab1   230 
Contig length: old 703, new 703

Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C BE442658Ld08P067G06P067G121R1_064.ab1   531 
  306    BE442658Ld08P067G06P067G121F1_064.ab1   159 
Contig length: old 717, new 717

Contig length: old 703, new 703
New start: 0 

Contig length: old 717, new 717
New start: 0