No. words: 2176; after pruning: 2124


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:384)  367  0.00 0.00 0.52  BE442658Ld09P067G06P067G121F1_062.ab1        1   386 (179)  C BE442658Ld09P067G06P067G121R1_062.ab1   (148)   384     1 *
Merge:(0)    0    0.0 5.6 (1,1:376)  361  0.00 0.27 0.27  BE442658Ld09P067G06P067G121F1_080.ab1        1   377 (148)  C BE442658Ld09P067G06P067G121R1_080.ab1   (177)   377     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    
 -524  -528  177 183    492     I -432- 59
Fail: (1)  492    0.0 2.6 (2,2:381)  118  0.00 0.00 0.00  BE442658Ld09P067G06P067G121F1_062.ab1      442   559 (6)    BE442658Ld09P067G06P067G121R1_080.ab1      437   554 (0)  
 -524  -523  177 188    492     I -432- 59
Fail: (1)  492    0.0 2.0 (2,2:376)   90  0.00 0.00 0.00  BE442658Ld09P067G06P067G121R1_062.ab1      442   532 (0)    BE442658Ld09P067G06P067G121F1_080.ab1      434   524 (1)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
492       0        2

Offset
  0       2 
  5       2 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  184 nodes

 94 str. conn. components

Path
    1  C BE442658Ld09P067G06P067G121R1_080.ab1   554 
  345    BE442658Ld09P067G06P067G121F1_080.ab1   167 
Contig length: old 702, new 703

Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C BE442658Ld09P067G06P067G121R1_062.ab1   532 
  308    BE442658Ld09P067G06P067G121F1_062.ab1   160 
Contig length: old 712, new 713

Contig length: old 703, new 703
New start: 0 

Contig length: old 713, new 713
New start: 0