No. words: 2167; after pruning: 2115


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:383)  375  0.00 0.00 0.00  BE442658Ld10P067G06P067G121F1_060.ab1        1   384 (145)  C BE442658Ld10P067G06P067G121R1_060.ab1   (177)   384     1 *
Merge:(0)    0    0.0 8.3 (1,1:377)  367  0.00 0.26 0.00  BE442658Ld10P067G06P067G121F1_078.ab1        1   378 (174)  C BE442658Ld10P067G06P067G121R1_078.ab1   (146)   379     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
 -551  -551  147 154    493     I -433- 59
Fail: (1)  493    0.0 2.6 (2,2:374)  118  0.00 0.00 0.00  BE442658Ld10P067G06P067G121R1_060.ab1      444   561 (0)    BE442658Ld10P067G06P067G121F1_078.ab1      435   552 (0)  
 -551  -556  147 149    493     I -433- 59
Fail: (1)  493    0.0 1.9 (2,2:379)   88  0.00 0.00 0.00  BE442658Ld10P067G06P067G121F1_060.ab1      440   527 (2)    BE442658Ld10P067G06P067G121R1_078.ab1      438   525 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
493       0        2

Offset
  0       2 
  5       2 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  188 nodes

 96 str. conn. components

Path
    1  C BE442658Ld10P067G06P067G121R1_078.ab1   525 
  203    BE442658Ld10P067G06P067G121F1_078.ab1    56 
  215  C BE442658Ld10P067G06P067G121R1_078.ab1   311 
  323    BE442658Ld10P067G06P067G121F1_078.ab1   176 
  335  C BE442658Ld10P067G06P067G121R1_078.ab1   191 
  351    BE442658Ld10P067G06P067G121F1_078.ab1   204 
  435  C BE442658Ld10P067G06P067G121R1_078.ab1    91 
  459    BE442658Ld10P067G06P067G121F1_078.ab1   312 
Contig length: old 699, new 699

Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C BE442658Ld10P067G06P067G121R1_060.ab1   561 
  409    BE442658Ld10P067G06P067G121F1_060.ab1   232 
Contig length: old 706, new 706

Contig length: old 699, new 699
New start: 0 

Contig length: old 706, new 706
New start: 0