No. words: 2185; after pruning: 2133


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   87    0.0 9.9 (1,1:0)  438  0.00 0.00 0.00  BE442658Ld11P067G06P067G121F1_058.ab1        1   446 (87)    BE442658Ld11P067G06P067G121F1_076.ab1        1   446 (113)  
Merge:(0)    0    0.0 8.3 (2,1:384)  367  0.00 0.00 0.52  BE442658Ld11P067G06P067G121F1_058.ab1        1   386 (147)  C BE442658Ld11P067G06P067G121R1_058.ab1   (176)   384     1 *
 -532  -559  0 174    87     S -532- -446
Fail: (1)   87    0.0 5.9 (3,1:384)  371  0.00 0.00 0.26  BE442658Ld11P067G06P067G121F1_058.ab1        1   385 (148)  C BE442658Ld11P067G06P067G121R1_076.ab1   (149)   384     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        1

Gap   # merges  # failures
 size
 0       1        0
87       1        1

Offset
  0       6 

Pass 4
             Gap  Score    
 -532  -559  0 174    87     S -532- -446
Fail: (1)   87    0.0 5.9 (3,1:384)  371  0.00 0.00 0.26  BE442658Ld11P067G06P067G121F1_058.ab1        1   385 (148)  C BE442658Ld11P067G06P067G121R1_076.ab1   (149)   384     1 *
 0  -175  532 558    441     S 0- 440
Fail: (1)  441    0.0 2.0 (3,1:0)   91  0.00 0.00 0.00  BE442658Ld11P067G06P067G121F1_058.ab1      442   533 (0)    BE442658Ld11P067G06P067G121R1_076.ab1      442   533 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
87       0        1
441       0        1

Offset
  0       4 

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 

Merge:(0)   87    0.0 8.2 (3,1:384)  371  0.00 0.00 0.26  BE442658Ld11P067G06P067G121F1_058.ab1        1   385 (148)  C BE442658Ld11P067G06P067G121R1_076.ab1   (149)   384     1 *

Contig 1:  1192 nodes

 136 str. conn. components

Path
    1  C BE442658Ld11P067G06P067G121R1_058.ab1   560 
  412    BE442658Ld11P067G06P067G121F1_058.ab1   236 
  616    BE442658Ld11P067G06P067G121F1_076.ab1   440 
Contig length: old 734, new 735

Contig length: old 735, new 735
New start: 0