No. words: 2141; after pruning: 2089


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:378)  362  0.00 0.26 0.26  BE442658Ld12P067G06P067G121F1_056.ab1        1   379 (144)  C BE442658Ld12P067G06P067G121R1_056.ab1   (174)   379     1 *
Merge:(0)    0    0.0 5.4 (1,1:368)  352  0.00 0.27 0.27  BE442658Ld12P067G06P067G121F1_074.ab1        1   369 (181)  C BE442658Ld12P067G06P067G121R1_074.ab1   (146)   369     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    
 -549  -549  146 147    492     I -433- 58
Fail: (1)  492    0.0 2.5 (2,2:375)  116  0.00 0.00 0.00  BE442658Ld12P067G06P067G121R1_056.ab1      438   553 (0)    BE442658Ld12P067G06P067G121F1_074.ab1      435   550 (0)  
Fail: (1)  154   -9.3 -4.0 (2,2:0)  416  0.69 0.00 0.00  BE442658Ld12P067G06P067G121R1_056.ab1       11   442 (111)    BE442658Ld12P067G06P067G121R1_074.ab1        1   432 (83)  
  Worst pair: offset 0 
LLR breakdown: discreps: -17.7 (<20 part: -1.5 (#=2), >20:-16.2 (#=3); in HQ: -17.7, out HQ 0.0), match: 8.4  total: -9.3  353  0.79 0.26 0.26  BE442658Ld12P067G06P067G121R1_056.ab1        1   379 (174)  C BE442658Ld12P067G06P067G121F1_074.ab1   (171)   379     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1
-9.3       0        1

Gap   # merges  # failures
 size
154       0        1
492       0        1

Offset
  0       3 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  180 nodes

 92 str. conn. components

Path
    1  C BE442658Ld12P067G06P067G121R1_074.ab1   515 
  419    BE442658Ld12P067G06P067G121F1_074.ab1   272 
Contig length: old 696, new 697

Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C BE442658Ld12P067G06P067G121R1_056.ab1   553 
  435    BE442658Ld12P067G06P067G121F1_056.ab1   260 
Contig length: old 697, new 698

Contig length: old 697, new 697
New start: 0 

Contig length: old 698, new 698
New start: 0