No. words: 1116; after pruning: 1077


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:324)  284  1.26 0.95 0.00  BE442782At02P016E02E08F1_053.ab1        5   321 (49)  C BE442782At02P016E02E08R1_053.scf.scf   (50)   323     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C BE442782At02P016E02E08R1_053.scf.scf   373 
  367    BE442782At02P016E02E08F1_053.ab1   318 
Contig length: old 418, new 419

Contig length: old 419, new 419
New start: 0