No. words: 1517; after pruning: 1478


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.2 -0.2 (1,1:338)  323  0.00 0.59 0.00  BE442782Ld04P016E02E08F1_062.ab1        1   338 (153)  C BE442782Ld04P016E02E08R1_062.scf.scf   (173)   340     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    3

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C BE442782Ld04P016E02E08R1_062.scf.scf   513 
  509    BE442782Ld04P016E02E08F1_062.ab1   334 
Contig length: old 665, new 666

Contig length: old 666, new 666
New start: 0