No. words: 1549; after pruning: 1510


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:338)  327  0.00 0.29 0.00  BE442782Ld07P016E02E08F1_056.ab1        1   339 (162)  C BE442782Ld07P016E02E08R1_056.scf.scf   (184)   340     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C BE442782Ld07P016E02E08R1_056.scf.scf   524 
  520    BE442782Ld07P016E02E08F1_056.ab1   335 
Contig length: old 686, new 686

Contig length: old 686, new 686
New start: 0