No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.0 (1,1:460)  443  0.00 0.22 0.43  BE442818At02P129A03P129A091F1_053.ab1        1   462 (36)  C BE442818At02P129A03P129A091R1_053.ab1   (42)   461     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C BE442818At02P129A03P129A091R1_053.ab1   503 
   60    BE442818At02P129A03P129A091F1_053.ab1    17 
   72  C BE442818At02P129A03P129A091R1_053.ab1   432 
   76    BE442818At02P129A03P129A091F1_053.ab1    33 
   80  C BE442818At02P129A03P129A091R1_053.ab1   424 
   84    BE442818At02P129A03P129A091F1_053.ab1    41 
  100  C BE442818At02P129A03P129A091R1_053.ab1   404 
  104    BE442818At02P129A03P129A091F1_053.ab1    61 
  112  C BE442818At02P129A03P129A091R1_053.ab1   392 
  116    BE442818At02P129A03P129A091F1_053.ab1    73 
  124  C BE442818At02P129A03P129A091R1_053.ab1   380 
  136    BE442818At02P129A03P129A091F1_053.ab1    93 
  144  C BE442818At02P129A03P129A091R1_053.ab1   360 
  148    BE442818At02P129A03P129A091F1_053.ab1   105 
  160  C BE442818At02P129A03P129A091R1_053.ab1   344 
  164    BE442818At02P129A03P129A091F1_053.ab1   121 
  172  C BE442818At02P129A03P129A091R1_053.ab1   332 
  352    BE442818At02P129A03P129A091F1_053.ab1   309 
  356  C BE442818At02P129A03P129A091R1_053.ab1   148 
  364    BE442818At02P129A03P129A091F1_053.ab1   321 
  368  C BE442818At02P129A03P129A091R1_053.ab1   136 
  404    BE442818At02P129A03P129A091F1_053.ab1   361 
  416  C BE442818At02P129A03P129A091R1_053.ab1    88 
  440    BE442818At02P129A03P129A091F1_053.ab1   397 
  448  C BE442818At02P129A03P129A091R1_053.ab1    56 
  468    BE442818At02P129A03P129A091F1_053.ab1   425 
  472  C BE442818At02P129A03P129A091R1_053.ab1    32 
  480    BE442818At02P129A03P129A091F1_053.ab1   437 
Contig length: old 540, new 541

Contig length: old 541, new 541
New start: 0