No. words: 1294; after pruning: 1268


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.4 (1,1:486)  464  0.21 0.00 0.41  BE442818Ld01P129A03P129A091F1_008.ab1        3   488 (144)  C BE442818Ld01P129A03P129A091R1_008.ab1   (178)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BE442818Ld01P129A03P129A091R1_008.ab1   662 
  330    BE442818Ld01P129A03P129A091F1_008.ab1   154 
  334  C BE442818Ld01P129A03P129A091R1_008.ab1   329 
  342    BE442818Ld01P129A03P129A091F1_008.ab1   166 
  382  C BE442818Ld01P129A03P129A091R1_008.ab1   281 
  386    BE442818Ld01P129A03P129A091F1_008.ab1   210 
  406  C BE442818Ld01P129A03P129A091R1_008.ab1   257 
  414    BE442818Ld01P129A03P129A091F1_008.ab1   238 
  422  C BE442818Ld01P129A03P129A091R1_008.ab1   241 
  426    BE442818Ld01P129A03P129A091F1_008.ab1   250 
  442  C BE442818Ld01P129A03P129A091R1_008.ab1   221 
  462    BE442818Ld01P129A03P129A091F1_008.ab1   286 
  490  C BE442818Ld01P129A03P129A091R1_008.ab1   173 
  498    BE442818Ld01P129A03P129A091F1_008.ab1   322 
  506  C BE442818Ld01P129A03P129A091R1_008.ab1   157 
  514    BE442818Ld01P129A03P129A091F1_008.ab1   338 
Contig length: old 807, new 808

Contig length: old 808, new 808
New start: 0