No. words: 1439; after pruning: 1413


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:750)  561  0.17 0.00 0.00  BE442818Ld04P129G02P129G081F1_075.ab1      166   751 (102)  C BE442818Ld04P129G02P129G081R1_075.ab1   (0)   586     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    BE442818Ld04P129G02P129G081F1_075.ab1     1 
  333  C BE442818Ld04P129G02P129G081R1_075.ab1   419 
  337    BE442818Ld04P129G02P129G081F1_075.ab1   337 
  401  C BE442818Ld04P129G02P129G081R1_075.ab1   351 
  405    BE442818Ld04P129G02P129G081F1_075.ab1   405 
  497  C BE442818Ld04P129G02P129G081R1_075.ab1   255 
  501    BE442818Ld04P129G02P129G081F1_075.ab1   501 
  525  C BE442818Ld04P129G02P129G081R1_075.ab1   227 
  533    BE442818Ld04P129G02P129G081F1_075.ab1   533 
  537  C BE442818Ld04P129G02P129G081R1_075.ab1   215 
  549    BE442818Ld04P129G02P129G081F1_075.ab1   549 
  609  C BE442818Ld04P129G02P129G081R1_075.ab1   143 
  701    BE442818Ld04P129G02P129G081F1_075.ab1   701 
  733  C BE442818Ld04P129G02P129G081R1_075.ab1    19 
  741    BE442818Ld04P129G02P129G081F1_075.ab1   741 
Contig length: old 853, new 853

Contig length: old 853, new 853
New start: 0