No. words: 1305; after pruning: 1279


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.0 (1,1:497)  476  0.00 0.20 0.20  BE442818Ld05P129A03P129A091F1_031.ab1        1   495 (144)  C BE442818Ld05P129A03P129A091R1_031.ab1   (168)   498     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C BE442818Ld05P129A03P129A091R1_031.ab1   666 
  322    BE442818Ld05P129A03P129A091F1_031.ab1   153 
  326  C BE442818Ld05P129A03P129A091R1_031.ab1   341 
  342    BE442818Ld05P129A03P129A091F1_031.ab1   173 
  354  C BE442818Ld05P129A03P129A091R1_031.ab1   313 
  378    BE442818Ld05P129A03P129A091F1_031.ab1   209 
  406  C BE442818Ld05P129A03P129A091R1_031.ab1   261 
  418    BE442818Ld05P129A03P129A091F1_031.ab1   249 
  422  C BE442818Ld05P129A03P129A091R1_031.ab1   245 
  430    BE442818Ld05P129A03P129A091F1_031.ab1   261 
  434  C BE442818Ld05P129A03P129A091R1_031.ab1   233 
  438    BE442818Ld05P129A03P129A091F1_031.ab1   269 
  442  C BE442818Ld05P129A03P129A091R1_031.ab1   225 
  514    BE442818Ld05P129A03P129A091F1_031.ab1   345 
  538  C BE442818Ld05P129A03P129A091R1_031.ab1   129 
  542    BE442818Ld05P129A03P129A091F1_031.ab1   373 
  562  C BE442818Ld05P129A03P129A091R1_031.ab1   105 
  566    BE442818Ld05P129A03P129A091F1_031.ab1   397 
Contig length: old 807, new 808

Contig length: old 808, new 808
New start: 0