No. words: 1295; after pruning: 1269


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:491)  471  0.41 0.00 0.20  BE442818Ld09P129A03P129A091F1_023.ab1        1   492 (142)  C BE442818Ld09P129A03P129A091R1_023.ab1   (170)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BE442818Ld09P129A03P129A091R1_023.ab1   661 
  270    BE442818Ld09P129A03P129A091F1_023.ab1   100 
  282  C BE442818Ld09P129A03P129A091R1_023.ab1   380 
  310    BE442818Ld09P129A03P129A091F1_023.ab1   140 
  318  C BE442818Ld09P129A03P129A091R1_023.ab1   344 
  322    BE442818Ld09P129A03P129A091F1_023.ab1   152 
  326  C BE442818Ld09P129A03P129A091R1_023.ab1   336 
  338    BE442818Ld09P129A03P129A091F1_023.ab1   168 
  350  C BE442818Ld09P129A03P129A091R1_023.ab1   312 
  358    BE442818Ld09P129A03P129A091F1_023.ab1   188 
  366  C BE442818Ld09P129A03P129A091R1_023.ab1   296 
  374    BE442818Ld09P129A03P129A091F1_023.ab1   204 
  394  C BE442818Ld09P129A03P129A091R1_023.ab1   268 
  414    BE442818Ld09P129A03P129A091F1_023.ab1   244 
  418  C BE442818Ld09P129A03P129A091R1_023.ab1   244 
  426    BE442818Ld09P129A03P129A091F1_023.ab1   256 
  442  C BE442818Ld09P129A03P129A091R1_023.ab1   220 
  462    BE442818Ld09P129A03P129A091F1_023.ab1   292 
  466  C BE442818Ld09P129A03P129A091R1_023.ab1   196 
  478    BE442818Ld09P129A03P129A091F1_023.ab1   308 
  498  C BE442818Ld09P129A03P129A091R1_023.ab1   164 
  510    BE442818Ld09P129A03P129A091F1_023.ab1   340 
  558  C BE442818Ld09P129A03P129A091R1_023.ab1   104 
  562    BE442818Ld09P129A03P129A091F1_023.ab1   392 
Contig length: old 803, new 804

Contig length: old 804, new 804
New start: 0