No. words: 1221; after pruning: 1195


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.0 -4.0 (1,1:616)  512  3.51 0.00 0.00  BE442818Ta19P146E04P129G081F1_055.ab1       19   617 (5)  C BE442818Ta19P146E04P129G081R1_055.ab1   (0)   599     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -16.9 (<20 part: -14.8 (#=20), >20:-2.1 (#=1); in HQ: -16.9, out HQ 0.0), match: 12.9  total: -4.0  512  3.51 0.00 0.00  BE442818Ta19P146E04P129G081F1_055.ab1       19   617 (5)  C BE442818Ta19P146E04P129G081R1_055.ab1   (0)   599     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1    BE442818Ta19P146E04P129G081F1_055.ab1     1 
  506  C BE442818Ta19P146E04P129G081R1_055.ab1   112 
Contig length: old 622, new 617

Contig length: old 617, new 617
New start: 0 
S Change at: 38; seg lengths: entry 3, contig 3