No. words: 1092; after pruning: 1066


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:502)  486  0.00 0.20 0.20  BE442818Tu02P129A03P129A091F1_061.ab1        1   503 (43)  C BE442818Tu02P129A03P129A091R1_061.ab1   (43)   503     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE442818Tu02P129A03P129A091R1_061.ab1   546 
  309    BE442818Tu02P129A03P129A091F1_061.ab1   265 
  401  C BE442818Tu02P129A03P129A091R1_061.ab1   146 
  409    BE442818Tu02P129A03P129A091F1_061.ab1   365 
  429  C BE442818Tu02P129A03P129A091R1_061.ab1   118 
  449    BE442818Tu02P129A03P129A091F1_061.ab1   405 
  497  C BE442818Tu02P129A03P129A091R1_061.ab1    50 
  501    BE442818Tu02P129A03P129A091F1_061.ab1   457 
  517  C BE442818Tu02P129A03P129A091R1_061.ab1    30 
  525    BE442818Tu02P129A03P129A091F1_061.ab1   481 
Contig length: old 589, new 590

Contig length: old 590, new 590
New start: 0