No. words: 1256; after pruning: 1230


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:468)  453  0.00 0.21 0.21  BE443049Ld01P078D01P078D071F1_027.ab1        1   469 (175)  C BE443049Ld01P078D01P078D071R1_027.ab1   (143)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C BE443049Ld01P078D01P078D071R1_027.ab1   612 
  488    BE443049Ld01P078D01P078D071F1_027.ab1   344 
  496  C BE443049Ld01P078D01P078D071R1_027.ab1   117 
  512    BE443049Ld01P078D01P078D071F1_027.ab1   368 
  532  C BE443049Ld01P078D01P078D071R1_027.ab1    81 
  540    BE443049Ld01P078D01P078D071F1_027.ab1   396 
  544  C BE443049Ld01P078D01P078D071R1_027.ab1    69 
  552    BE443049Ld01P078D01P078D071F1_027.ab1   408 
  556  C BE443049Ld01P078D01P078D071R1_027.ab1    57 
  572    BE443049Ld01P078D01P078D071F1_027.ab1   428 
  580  C BE443049Ld01P078D01P078D071R1_027.ab1    33 
  584    BE443049Ld01P078D01P078D071F1_027.ab1   440 
  588  C BE443049Ld01P078D01P078D071R1_027.ab1    25 
  592    BE443049Ld01P078D01P078D071F1_027.ab1   448 
Contig length: old 787, new 788

Contig length: old 788, new 788
New start: 0