No. words: 1035; after pruning: 1009


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:475)  427  2.31 0.00 0.42  BE443049Tu02P078D01P078D071F1_065.ab1        1   477 (51)  C BE443049Tu02P078D01P078D071R1_065.ab1   (32)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C BE443049Tu02P078D01P078D071R1_065.ab1   507 
   36    BE443049Tu02P078D01P078D071F1_065.ab1     4 
   40  C BE443049Tu02P078D01P078D071R1_065.ab1   468 
   52    BE443049Tu02P078D01P078D071F1_065.ab1    20 
   64  C BE443049Tu02P078D01P078D071R1_065.ab1   444 
   68    BE443049Tu02P078D01P078D071F1_065.ab1    36 
   72  C BE443049Tu02P078D01P078D071R1_065.ab1   436 
   86    BE443049Tu02P078D01P078D071F1_065.ab1    54 
  118  C BE443049Tu02P078D01P078D071R1_065.ab1   390 
  126    BE443049Tu02P078D01P078D071F1_065.ab1    94 
  206  C BE443049Tu02P078D01P078D071R1_065.ab1   302 
  210    BE443049Tu02P078D01P078D071F1_065.ab1   178 
  234  C BE443049Tu02P078D01P078D071R1_065.ab1   274 
  238    BE443049Tu02P078D01P078D071F1_065.ab1   206 
  242  C BE443049Tu02P078D01P078D071R1_065.ab1   266 
  250    BE443049Tu02P078D01P078D071F1_065.ab1   218 
  310  C BE443049Tu02P078D01P078D071R1_065.ab1   198 
  314    BE443049Tu02P078D01P078D071F1_065.ab1   282 
  326  C BE443049Tu02P078D01P078D071R1_065.ab1   182 
  334    BE443049Tu02P078D01P078D071F1_065.ab1   302 
  354  C BE443049Tu02P078D01P078D071R1_065.ab1   154 
  362    BE443049Tu02P078D01P078D071F1_065.ab1   330 
  463  C BE443049Tu02P078D01P078D071R1_065.ab1    45 
  479    BE443049Tu02P078D01P078D071F1_065.ab1   447 
Contig length: old 559, new 560

Contig length: old 560, new 560
New start: 0