No. words: 1037; after pruning: 1011


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:476)  450  0.00 0.42 0.21  BE443288Ta18P052H02P003D081F1_029.ab1        1   477 (48)  C BE443288Ta18P052H02P003D081R1_029.ab1   (34)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C BE443288Ta18P052H02P003D081R1_029.ab1   512 
   90    BE443288Ta18P052H02P003D081F1_029.ab1    54 
  106  C BE443288Ta18P052H02P003D081R1_029.ab1   407 
  118    BE443288Ta18P052H02P003D081F1_029.ab1    82 
  134  C BE443288Ta18P052H02P003D081R1_029.ab1   379 
  138    BE443288Ta18P052H02P003D081F1_029.ab1   102 
  150  C BE443288Ta18P052H02P003D081R1_029.ab1   363 
  162    BE443288Ta18P052H02P003D081F1_029.ab1   126 
  170  C BE443288Ta18P052H02P003D081R1_029.ab1   343 
  246    BE443288Ta18P052H02P003D081F1_029.ab1   210 
  306  C BE443288Ta18P052H02P003D081R1_029.ab1   207 
  330    BE443288Ta18P052H02P003D081F1_029.ab1   294 
  362  C BE443288Ta18P052H02P003D081R1_029.ab1   151 
  394    BE443288Ta18P052H02P003D081F1_029.ab1   358 
  418  C BE443288Ta18P052H02P003D081R1_029.ab1    95 
  426    BE443288Ta18P052H02P003D081F1_029.ab1   390 
  454  C BE443288Ta18P052H02P003D081R1_029.ab1    59 
  466    BE443288Ta18P052H02P003D081F1_029.ab1   430 
Contig length: old 560, new 561

Contig length: old 561, new 561
New start: 0